Research, Research Articles

Type II-Metacaspases are involved in cell stress but not in cell death in the unicellular green alga Dunaliella tertiolecta

M. Teresa Mata1,&, Armando Palma1, Candela García-Gómez1,#, María López-Parages1, Víctor Vázquez1, Iván Cheng-Sánchez2, Francisco Sarabia2, Félix López-Figueroa1, Carlos Jiménez1 and María Segovia1

This article shows that in the green alga Dunaliella tertiolecta, Type-II metacaspases are involved in the stress response to ultraviolet radiation but are not linked to cell death, suggesting their role in survival strategies under stressful environmental conditions.

Transcriptomic and chemogenomic analyses unveil the essential role of Com2-regulon in response and tolerance of Saccharomyces cerevisiae to stress induced by sulfur dioxide

Patrícia Lage1,2, Belém Sampaio-Marques3,4, Paula Ludovico3,4, Nuno P. Mira5 and Ana Mendes-Ferreira1,2

This article shows that in the presence of sulfur dioxide (SO2), the transcription factor Com2 plays a critical role in the tolerance and response of Saccharomyces cerevisiae, affecting the expression of a majority of SO2-activated genes and contributing to the protection against stress induced by SO2 at an enologically relevant pH.

Proline metabolism regulates replicative lifespan in the yeast Saccharomyces cerevisiae

Yukio Mukai1, Yuka Kamei1, Xu Liu1, Shan Jiang1, Yukiko Sugimoto2, Noreen Suliani binti Mat Nanyan2, Daisuke Watanabe2 and Hiroshi Takagi2

This article shows that intracellular proline levels in the budding yeast Saccharomyces cerevisiae are correlated with its replicative lifespan, suggesting a protective role of proline against cellular senescence due to various stresses.

Network dynamics of the yeast methyltransferome

Guri Giaever1, Elena Lissina1 and Corey Nislow1

This article presents a systematic genetic analysis of methyltransferases (MTases) under normal and stress conditions, uncovering the complex and adaptive nature of the methyltransferome and discovering a potential connection between phospholipid methylation and histone methylation, suggesting interplay between lipid homeostasis and epigenetic regulation.

Functional link between mitochondria and Rnr3, the minor catalytic subunit of yeast ribonucleotide reductase

Isaac Corcoles-Saez1, Jean-Luc Ferat2, Michael Costanzo3, Charles M. Boone3 and Rita S. Cha1

This article shows that the carbon source affects the abundance of ribonucleotide reductase (RNR) subunits in yeast, with a novel Mec1 signaling axis regulating Rnr3 independently of known DNA damage response pathways, and reveals Rnr3's unexpected role in mitochondrial function.

Mitochondria-Associated Membranes (MAMs) are involved in Bax mitochondrial localization and cytochrome c release

Alexandre Légiot1, Claire Céré1, Thibaud Dupoiron1, Mohamed Kaabouni1, Nadine Camougrand1 and Stéphen Manon1

This study investigated the role of Mitochondria-Associated Membranes (MAMs) in the regulation of apoptosis by analyzing the localization and function of the pro-apoptotic protein Bax in yeast, finding that disruption of MAMs by deletion of the MDM34 gene affects Bax's mitochondrial localization and the release of cytochrome c.

Chlamydia pneumoniae is present in the dental plaque of periodontitis patients and stimulates an inflammatory response in gingival epithelial cells

Cássio Luiz Coutinho Almeida-da-Silva1, Tamer Alpagot2, Ye Zhu1, Sonho Sierra Lee3,4, Brian P. Roberts5, Shu-Chen Hung1, Norina Tang1,2 and David M. Ojcius1

This study found that Chlamydia pneumoniae is present more frequently in the dental plaque of individuals with periodontal disease, can invade human gingival epithelial cells causing inflammatory responses, and may therefore be a contributing factor to periodontal disease and a potential indicator of risk.

Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis

Catherine M. O’Connell1,#, Hayden Brochu2,#, Jenna Girardi1, Erin Harrell2, Aiden Jones2, Toni Darville1, Arlene C. Seña3 and Xinxia Peng2,4

This study used total RNA sequencing to analyze cervical samples from women at high risk for STIs, revealing that host transcriptional profiles can be linked to microbiome composition and STI infections, with implications for advancing our understanding of PID and identifying potential biomarkers.

Genome-wide analysis of yeast expression data based on a priori generated co-regulation cliques

Siyuan Sima1, Lukas Schmauder1 and Klaus Richter1

The study demonstrates the use of predefined genome-wide expression cliques, derived from extensive microarray data, to effectively analyze and visualize the complete gene expression response across various cellular conditions in yeast.

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Depletion of SNAP-23 and Syntaxin 4 alters lipid droplet homeostasis during Chlamydia infection

December 3, 2019

This study reveals that the plasma membrane SNARE proteins SNAP-23 and Syntaxin 4 are crucial for Chlamydia trachomatis development by regulating lipid droplet homeostasis and supporting the formation of infectious progeny within host cells.

Yeast can express and assemble bacterial secretins in the mitochondrial outer membrane

November 19, 2019

Secretins, essential components of bacterial secretion systems, can be expressed in yeast and show differential dependencies on mitochondrial import and assembly factors for membrane integration, suggesting diverse pathways for their assembly into the bacterial outer membrane.

Metabolic reprogramming of Salmonella infected macrophages and its modulation by iron availability and the mTOR pathway

November 14, 2019

This article shows that iron plays a critical role in both the immune response and metabolic reprogramming of macrophages during infection, influencing the TCA cycle and mTOR pathway, with implications for the growth of intracellular bacteria like Salmonella.

Type II-Metacaspases are involved in cell stress but not in cell death in the unicellular green alga Dunaliella tertiolecta

October 7, 2019

This article shows that in the green alga Dunaliella tertiolecta, Type-II metacaspases are involved in the stress response to ultraviolet radiation but are not linked to cell death, suggesting their role in survival strategies under stressful environmental conditions.

Transcriptomic and chemogenomic analyses unveil the essential role of Com2-regulon in response and tolerance of Saccharomyces cerevisiae to stress induced by sulfur dioxide

September 30, 2019

This article shows that in the presence of sulfur dioxide (SO2), the transcription factor Com2 plays a critical role in the tolerance and response of Saccharomyces cerevisiae, affecting the expression of a majority of SO2-activated genes and contributing to the protection against stress induced by SO2 at an enologically relevant pH.

Network dynamics of the yeast methyltransferome

July 9, 2019

This article presents a systematic genetic analysis of methyltransferases (MTases) under normal and stress conditions, uncovering the complex and adaptive nature of the methyltransferome and discovering a potential connection between phospholipid methylation and histone methylation, suggesting interplay between lipid homeostasis and epigenetic regulation.

Functional link between mitochondria and Rnr3, the minor catalytic subunit of yeast ribonucleotide reductase

May 20, 2019

This article shows that the carbon source affects the abundance of ribonucleotide reductase (RNR) subunits in yeast, with a novel Mec1 signaling axis regulating Rnr3 independently of known DNA damage response pathways, and reveals Rnr3's unexpected role in mitochondrial function.

Mitochondria-Associated Membranes (MAMs) are involved in Bax mitochondrial localization and cytochrome c release

March 15, 2019

This study investigated the role of Mitochondria-Associated Membranes (MAMs) in the regulation of apoptosis by analyzing the localization and function of the pro-apoptotic protein Bax in yeast, finding that disruption of MAMs by deletion of the MDM34 gene affects Bax's mitochondrial localization and the release of cytochrome c.

Chlamydia pneumoniae is present in the dental plaque of periodontitis patients and stimulates an inflammatory response in gingival epithelial cells

March 11, 2019

This study found that Chlamydia pneumoniae is present more frequently in the dental plaque of individuals with periodontal disease, can invade human gingival epithelial cells causing inflammatory responses, and may therefore be a contributing factor to periodontal disease and a potential indicator of risk.

Genome-wide analysis of yeast expression data based on a priori generated co-regulation cliques

January 22, 2019

The study demonstrates the use of predefined genome-wide expression cliques, derived from extensive microarray data, to effectively analyze and visualize the complete gene expression response across various cellular conditions in yeast.

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